Anchored HTML File of EIDs

	WEB-based GEne SeT AnaLysis Toolkit

	*Translating gene lists into biological insights...*

User data and parameters: User data: textAreaUpload.txt, Organism: hsapiens, Id Type: ensembl_gene_stable_id, Ref Set: entrezgene, Significance Level: Top10, Statistics Test: Hypergeometric, MTC: BH, Minimum: 2

The results for each enriched gene sets are listed in this table.
For each gene set, the first row lists database name, gene set name , and corresponding gene set ID.
The second row lists the following statistics:

C: the number of reference genes in the category
O: the number of genes in the gene set and also in the category
E: the expected number in the category
R: ratio of enrichment
rawP: p value from hypergeometric test
adjP: p value adjusted by the multiple test adjustment

Finally, genes in the pathway are listed. For each gene, the table lists the user uploaded ID and value (optional), Entrez ID, Ensembl Gene Stable ID, Gene symbol, and description. Ensembl Gene Stable ID and Entrez Gene ID are linked to the Ensembl and Entrez Gene databases, respectively.

Database:KEGG pathway Name:Cell adhesion molecules (CAMs) ID:04514
C=133; O=5; E=0.14; R=35.25; rawP=3.20e-07; adjP=9.60e-07
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000021645	NA	NRXN3	neurexin 3	9369	ENSG00000021645
2	ENSG00000196338	NA	NLGN3	neuroligin 3	54413	ENSG00000196338
3	ENSG00000179915	NA	NRXN1	neurexin 1	9378	ENSG00000179915
4	ENSG00000158887	NA	MPZ	myelin protein zero	4359	ENSG00000158887
5	ENSG00000198910	NA	L1CAM	L1 cell adhesion molecule	3897	ENSG00000198910

Database:KEGG pathway Name:Protein digestion and absorption ID:04974
C=81; O=2; E=0.09; R=23.15; rawP=0.0034; adjP=0.0051
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000092758	NA	COL9A3	collagen, type IX, alpha 3	1299	ENSG00000092758
2	ENSG00000164626	NA	KCNK5	potassium channel, subfamily K, member 5	8645	ENSG00000164626

Database:KEGG pathway Name:Neuroactive ligand-receptor interaction ID:04080
C=272; O=2; E=0.29; R=6.89; rawP=0.0342; adjP=0.0342
Index	UserID	Value	Gene Symbol	Gene Name	EntrezGene	Ensembl
1	ENSG00000180772	NA	AGTR2	angiotensin II receptor, type 2	186	ENSG00000180772
2	ENSG00000163873	NA	GRIK3	glutamate receptor, ionotropic, kainate 3	2899	ENSG00000163873

WebGestalt is currently developed and maintained by Jing Wang and Bing Zhang at the Zhang Lab. Other people who have made significant contribution to the project include Dexter Duncan, Stefan Kirov, Zhiao Shi, and Jay Snoddy.

Funding credits: NIH/NIAAA (U01 AA016662, U01 AA013512); NIH/NIDA (P01 DA015027); NIH/NIMH (P50 MH078028, P50 MH096972); NIH/NCI (U24 CA159988); NIH/NIGMS (R01 GM088822).